How do I change alert and monitoring criteria in SQLdm

I have a couple of SQL instances that are running fine but show up in SQLdm as critical because of how we have them configured. One is running a third-party application that requires the CLR configuration option be enabled. On the other we have the SQL agent disabled intentionally. Both of these are flagged as critical faults. I would like to have SQLdm ignore these just for these two servers. How can I do that?